This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000RDCE.1

Viet_Nam/LOC_000RDCE.1/2026-03-23
N. Q. M. Ngo, A. N. Lam, H. C. T. Truong, T. H. N. Nguyen, T. Q. Du, M. H. Cao, D. K. H. Do, N. T. N. Le, T. H. Nguyen, H. K. Truong, T. T. H. Nguyen, N. T. N. Phung, V. Q. Pham, M. N. Nghiem, E. J. Park, S. K. Vester, T. T. Cao, K. T. Le, T. D. Nguyen, M. T. Ha, H. R. V. Doorn, V. V. C. Nguyen, E. R. Adams, T. T. Tran, T. A. Nguyen & V. T. Le

Oxford University Clinical Research Unit, Emerging Infections

Sample details

Collection date
2026-03-23
Earliest release date
2026-09-15
Sampling location
Viet Nam
Isolate name
VN146-2026

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-09-15
NCBI update date
2026-09-15
INSDC accession

Host

Host

Submission details

Submission ID
PZ583224.1
Submitting group
Date submitted
2026-09-26 01:33:46 UTC
Date released
2026-09-26 01:42:12 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1371
Total inserted nucs
11
Total deleted nucs
11
Length
7238 (97.7%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • T36C
  • T48C
  • T51C
  • A54T
  • G58A
  • A60T
  • T61C
  • T63A
  • T67A
  • C69T
  • A76G
  • C90A
  • T95C
  • T99A
  • G100C
  • C117T
  • A123G
  • A124C
Deletions
101, 308, 680-683, 711-715
Insertions
ins_128:CT, ins_695:C, ins_706:TTA, ins_729:TGAAA

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N
  • 2A:R68Q
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102V
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:T15M
  • 2B:I33V
  • 2B:A81S
  • 2B:I93V

2C

  • 2C:F22S
  • 2C:N48S
  • 2C:V60I
  • 2C:S66A
  • 2C:I81S
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T214A
  • 2C:Y243F
  • 2C:T271S

3A

  • 3A:K4R
  • 3A:E39D

3B

  • 3B:P9Q
  • 3B:I10T

3C

  • 3C:I36V
  • 3C:V49I
  • 3C:I54V
  • 3C:L72I
  • 3C:C89F
  • 3C:V93S
  • 3C:T95S
  • 3C:I109M
  • 3C:V114I
  • 3C:P144A
  • 3C:A169G
  • 3C:G173S
  • 3C:S177G
  • 3C:A180T

3D

  • 3D:R10K
  • 3D:T44H
  • 3D:V74I
  • 3D:T75R
  • 3D:Q76E
  • 3D:D89E
  • 3D:N91D
  • 3D:K94Q
  • 3D:E105D
  • 3D:Y106N
  • 3D:V134T
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:L165M
  • 3D:R169K

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P27S
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I262V
  • VP1:S275A
  • VP1:D282N

VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:I170V
  • VP2:M198I
  • VP2:T200A

VP3

  • VP3:M100L
  • VP3:T232S
  • VP3:E237Q
  • VP3:A239G

VP4

  • VP4:T7A
Deletions
N/A
Insertions
N/A

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